Index

A

add_arrow() (systematic_review.analysis.Annotate method) add_box() (systematic_review.analysis.TextInBox method) add_citation_text_column() (in module systematic_review.citation) add_dict_element_with_count() (in module systematic_review.validation) add_downloaded_flag_column_and_file_location_column() (systematic_review.validation.Validation method) add_multiple_sources_column() (in module systematic_review.citation) add_preprocess_column() (in module systematic_review.converter) adding_citation_details_with_keywords_count_in_pdf_full_text() (in module systematic_review.search_count)

adding_dict_key_or_increasing_value() (in module systematic_review.search_count) amount_by_percentage() (in module systematic_review.validation) analysis_of_multiple_ris_citations_files() (in module systematic_review.analysis) Annotate (class in systematic_review.analysis) apply_custom_function_on_dataframe_column() (in module systematic_review.converter) ASReview (class in systematic_review.converter) authors_analysis() (systematic_review.analysis.CitationAnalysis method) authors_info() (systematic_review.analysis.CitationAnalysis method)

C

calculate_percentage() (in module systematic_review.validation) check() (systematic_review.validation.Validation method) citation_list_of_dict_search_count_to_df() (in module systematic_review.search_count) citation_search_count_dataframe() (in module systematic_review.search_count) citation_text_column_name (systematic_review.search_count.SearchCount attribute) CitationAnalysis (class in systematic_review.analysis) Citations (class in systematic_review.citation) citations_to_ris_converter() (in module systematic_review.citation) cleaned_article_column_name (systematic_review.validation.Validation attribute) compare_two_dict_members_via_percent_similarity() (in module systematic_review.validation) compare_two_list_members_via_percent_similarity() (in module systematic_review.validation) construct_search_words_from_list() (systematic_review.search_count.SearchWords method) convert_string_to_lowercase() (in module systematic_review.string_manipulation)

count_keywords_in_citations_full_text() (in module systematic_review.search_count) count_keywords_in_citations_full_text_list() (in module systematic_review.search_count) count_keywords_in_pdf_full_text() (in module systematic_review.search_count) count_search_words_in_citations_text() (in module systematic_review.search_count) (systematic_review.search_count.SearchCount method) count_search_words_in_research_paper_text() (systematic_review.search_count.SearchCount method) count_words_in_list_of_lists() (in module systematic_review.search_count) counts() (systematic_review.search_count.SearchCount method) create_citations_dataframe() (systematic_review.citation.Citations method) creating_default_keyword_count_dict() (systematic_review.search_count.SearchWords method) creating_keyword_count_dict() (in module systematic_review.search_count) creating_sample_review_file() (in module systematic_review.analysis) custom_box() (in module systematic_review.analysis)

D

dataframe_column_counts() (in module systematic_review.converter) dataframe_sorting_criterion_list() (in module systematic_review.filter_sort) dataframe_to_csv_file() (in module systematic_review.converter) dataframe_to_excel_file() (in module systematic_review.converter) dataframe_to_records_list() (in module systematic_review.converter) deep_validate_column_details_between_two_record_list() (in module systematic_review.validation) dict_from_list_with_element_count() (in module systematic_review.validation) dict_key_value_to_records() (in module systematic_review.converter)

dict_values_data_type() (in module systematic_review.converter) download_flag_column_name (systematic_review.analysis.SystematicReviewInfo attribute) (systematic_review.search_count.SearchCount attribute) (systematic_review.validation.Validation attribute) drop_columns_based_on_column_name_list() (in module systematic_review.citation) drop_duplicates_citations() (in module systematic_review.citation) drop_search_words_count_columns() (in module systematic_review.citation) duplicate_count() (in module systematic_review.analysis)

E

edit_ris_citation_paste_values_after_regex_pattern() (in module systematic_review.citation) exact_words_checker_in_text() (in module systematic_review.validation) (systematic_review.validation.ValidateWordsInText method)

extract_files_path_from_directories_or_subdirectories() (in module systematic_review.os_utils) extract_keywords() (systematic_review.analysis.CitationAnalysis method) extract_pandas_df_column1_row_values_based_on_column2_value() (in module systematic_review.converter) extract_subdirectories_path_from_directory() (in module systematic_review.os_utils)

F

file_invalidated_flag_name (systematic_review.validation.Validation attribute) file_manual_check_flag_name (systematic_review.validation.Validation attribute) file_name_and_path_dict() (systematic_review.validation.Validation method) file_not_accessible_flag_name (systematic_review.validation.Validation attribute) file_not_downloaded_flag_name (systematic_review.validation.Validation attribute) file_validated_flag_name (systematic_review.analysis.SystematicReviewInfo attribute) (systematic_review.validation.Validation attribute)

filter_and_sort() (in module systematic_review.filter_sort) (systematic_review.filter_sort.FilterSort method) filter_dataframe_on_keywords_group_name_count() (in module systematic_review.filter_sort) FilterSort (class in systematic_review.filter_sort) finding_missed_articles_from_downloading() (in module systematic_review.validation) finding_required_article_by_changing_min_limit_recursively() (in module systematic_review.filter_sort)

G

generate_keywords_count_dictionary() (systematic_review.search_count.SearchWords method) get_all_filenames_in_dir() (in module systematic_review.os_utils) get_dataframe() (systematic_review.citation.Citations method) (systematic_review.filter_sort.FilterSort method) (systematic_review.search_count.SearchCount method) (systematic_review.validation.Validation method) get_dataframe_column_as_list() (in module systematic_review.validation) get_dataframe_sorting_criterion_list() (in module systematic_review.filter_sort) get_details_of_all_article_name_from_citations() (in module systematic_review.citation) get_details_via_article_name_from_citations() (in module systematic_review.citation) get_directory_file_name_and_path() (in module systematic_review.os_utils) get_file() (systematic_review.converter.ASReview method) get_file_extension_from_path() (in module systematic_review.os_utils) get_filename_from_path() (in module systematic_review.os_utils) get_missed_articles_dataframe() (in module systematic_review.validation) get_missed_articles_source_names() (in module systematic_review.citation) get_missed_original_articles_list() (in module systematic_review.validation)

get_path_leaf() (in module systematic_review.os_utils) get_pd_df_columns_names_with_prefix_suffix() (in module systematic_review.filter_sort) get_pdf_object_from_pdf_path() (in module systematic_review.converter) get_records_list() (systematic_review.citation.Citations method) (systematic_review.filter_sort.FilterSort method) (systematic_review.search_count.SearchCount method) (systematic_review.validation.Validation method) get_sample_search_words_json() (systematic_review.search_count.SearchWords method) get_sorting_keywords_criterion_list() (in module systematic_review.search_count) (systematic_review.search_count.SearchWords method) get_sources_name_citations_mapping() (in module systematic_review.os_utils) get_text() (systematic_review.converter.Reader method) get_text_from_multiple_pdf_reader() (in module systematic_review.converter) get_text_from_pdf() (in module systematic_review.converter) get_text_from_pdf_pdftotext() (in module systematic_review.converter) get_text_from_pdf_pymupdf() (in module systematic_review.converter) get_text_list() (systematic_review.analysis.SystematicReviewInfo method) getting_article_paths_from_validation_detail() (in module systematic_review.validation)

I

info() (systematic_review.analysis.SystematicReviewInfo method) (systematic_review.validation.Validation method)

J

json_file_to_dict() (in module systematic_review.converter)

jumbled_words_percentage_checker_in_text() (in module systematic_review.validation) (systematic_review.validation.ValidateWordsInText method)

K

keyword_diagram() (systematic_review.analysis.CitationAnalysis method)

keywords_info() (systematic_review.analysis.CitationAnalysis method)

L

list_to_string() (in module systematic_review.converter) list_to_text_file() (in module systematic_review.converter)

load_multiple_ris_citations_files() (in module systematic_review.converter) load_multiple_ris_citations_files_to_dataframe() (in module systematic_review.converter) load_text_file() (in module systematic_review.converter)

M

manual_validating_of_pdf() (in module systematic_review.validation) manually_check_filter_by_min_limit_changes() (in module systematic_review.filter_sort) missed_article_count() (in module systematic_review.analysis) module systematic_review.analysis systematic_review.citation systematic_review.converter systematic_review.filter_sort systematic_review.nlp systematic_review.os_utils systematic_review.search_count systematic_review.string_manipulation systematic_review.validation

multiple_methods() (systematic_review.validation.ValidateWordsInText method) multiple_methods_validating_pdf_via_filename() (in module systematic_review.validation) multiple_methods_validating_words_string_in_text() (in module systematic_review.validation)

N

nltk_lancaster_stemmer() (in module systematic_review.nlp) nltk_porter_stemmer() (in module systematic_review.nlp)

nltk_remove_stopwords() (in module systematic_review.nlp) nltk_remove_stopwords_spacy_lemma() (in module systematic_review.nlp) nltk_word_net_lemmatizer() (in module systematic_review.nlp)

P

pandas_countplot_with_pandas_dataframe_column() (in module systematic_review.analysis) pandas_reader() (systematic_review.converter.Reader method) pattern_lemma_or_lemmatize_text() (in module systematic_review.nlp) pdf_filename_from_filepath() (in module systematic_review.string_manipulation) pdf_full_text_search_count_dataframe() (in module systematic_review.search_count) pdf_pdftotext_reader() (systematic_review.converter.Reader method) pdf_pymupdf_reader() (systematic_review.converter.Reader method) preprocess_search_keywords_dictionary() (systematic_review.search_count.SearchWords method)

preprocess_searched_keywords() (systematic_review.search_count.SearchWords method) preprocess_string() (in module systematic_review.string_manipulation) preprocess_string_to_space_separated_words() (in module systematic_review.string_manipulation) publication_place_diagram() (systematic_review.analysis.CitationAnalysis method) publication_place_info() (systematic_review.analysis.CitationAnalysis method) publication_year_diagram() (systematic_review.analysis.CitationAnalysis method) publication_year_info() (systematic_review.analysis.CitationAnalysis method) publisher_diagram() (systematic_review.analysis.CitationAnalysis method) publisher_info() (systematic_review.analysis.CitationAnalysis method)

R

Reader (class in systematic_review.converter) records_list_to_dataframe() (in module systematic_review.converter) remove_duplicates_keywords_from_next_groups() (in module systematic_review.search_count) remove_empty_lines() (in module systematic_review.converter) remove_non_ascii() (in module systematic_review.string_manipulation) replace_symbols_with_space() (in module systematic_review.string_manipulation)

research_paper_file_location_column_name (systematic_review.search_count.SearchCount attribute) (systematic_review.validation.Validation attribute) return_finding_near_required_article_by_changing_min_limit_while_loop() (in module systematic_review.filter_sort) return_finding_required_article_by_changing_min_limit_recursively() (in module systematic_review.filter_sort) ris_file_to_pandas_dataframe() (in module systematic_review.converter) ris_file_to_records_list() (in module systematic_review.converter)

S

sample_dict (systematic_review.search_count.SearchWords attribute) seaborn_countplot_with_pandas_dataframe_column() (in module systematic_review.analysis) SearchCount (class in systematic_review.search_count) SearchWords (class in systematic_review.search_count) similarity_sequence_matcher() (in module systematic_review.validation) sort_citations_grouped_keywords_counts_df() (in module systematic_review.filter_sort) sort_dataframe_based_on_column() (in module systematic_review.filter_sort) spacy_lemma() (in module systematic_review.nlp) split_preprocess_string() (in module systematic_review.string_manipulation) split_words_remove_duplicates() (in module systematic_review.string_manipulation) string_dict_to_lower() (in module systematic_review.string_manipulation) string_list_to_lower() (in module systematic_review.string_manipulation) string_to_space_separated_words() (in module systematic_review.string_manipulation) strip_string_from_right_side() (in module systematic_review.string_manipulation) systematic_review.analysis module systematic_review.citation module

systematic_review.converter module systematic_review.filter_sort module systematic_review.nlp module systematic_review.os_utils module systematic_review.search_count module systematic_review.string_manipulation module systematic_review.validation module systematic_review_diagram() (systematic_review.analysis.SystematicReviewInfo method) SystematicReviewInfo (class in systematic_review.analysis)

T

text_file_to_list() (in module systematic_review.converter) text_manipulation_methods() (in module systematic_review.string_manipulation) text_padding_for_visualise() (in module systematic_review.analysis) TextInBox (class in systematic_review.analysis) to_csv() (systematic_review.citation.Citations method) (systematic_review.filter_sort.FilterSort method) (systematic_review.search_count.SearchCount method) (systematic_review.validation.Validation method)

to_excel() (systematic_review.citation.Citations method) (systematic_review.filter_sort.FilterSort method) (systematic_review.search_count.SearchCount method) (systematic_review.validation.Validation method) try_convert_dataframe_column_elements_to_list() (in module systematic_review.converter)

U

unique_keywords_in_preprocessed_clean_keywords_dict() (systematic_review.search_count.SearchWords method)

unpack_list_of_lists() (in module systematic_review.converter) unpack_list_of_lists_with_optional_apply_custom_function() (in module systematic_review.converter)

V

validate_column_details_between_two_record_list() (in module systematic_review.validation) ValidateWordsInText (class in systematic_review.validation) validating_multiple_pdfs_via_filenames() (in module systematic_review.validation) validating_pdf_via_filename() (in module systematic_review.validation)

validating_pdfs_using_multiple_pdf_reader() (in module systematic_review.validation) Validation (class in systematic_review.validation) validation_manual_method_name (systematic_review.validation.Validation attribute) validation_method_column_name (systematic_review.validation.Validation attribute) vertical_dict_view() (in module systematic_review.analysis)

W

words_percentage_checker_in_text() (in module systematic_review.validation) (systematic_review.validation.ValidateWordsInText method)

write_json_file_with_dict() (in module systematic_review.converter)